Molecular Characterization, Phylogenetic and Variation Analyzes of SARS-CoV-2 strains in Turkey
Yazarlar (3)
Doç. Dr. Murat KARAMEŞE
Kafkas Üniversitesi, Türkiye
Didem Özgür
Kafkas Üniversitesi, Türkiye
Emin Ediz Tütüncü
Kafkas Üniversitesi, Türkiye
| Makale Türü |
Özgün Makale
(SSCI, AHCI, SCI, SCI-Exp dergilerinde yayınlanan tam makale)
|
||
| Dergi Adı | FUTURE MICROBIOLOGY (Q3) | ||
| Dergi ISSN | 1746-0913 Wos Dergi Scopus Dergi | ||
| Dergi Tarandığı Indeksler | SCI-Expanded | ||
| Makale Dili | İngilizce | Basım Tarihi | 10-2021 |
| Cilt / Sayı / Sayfa | 16 / 15 / 1209–1214 | DOI | 10.2217/fmb-2021-0118 |
| Makale Linki | https://www.futuremedicine.com/journal/fmb | ||
| Özet |
| We present the sequence and single-nucleotide polymorphism (SNP) analysis for 47 complete genomes for SARS-CoV-2 isolates on Turkish patients. The Illumina MiSeq platform was used for sequencing the libraries. The SNPs were detected by using Genome Analysis Toolkit - HaplotypeCaller v.3.8.0 and were inspected on GenomeBrowse v2.1.2. All viral genome sequences of our isolates were located in lineage B under the different clusters, such as B.1 (n = 3), B.1.1 (n = 28) and B.1.9 (n = 16). According to the Global Initiative on Sharing All Influenza Data nomenclature, all of our complete genomes were placed in G, GR and GH clades. In our study, 549 total and 53 unique SNPs were detected. The results indicate that the SARS-CoV-2 sequences of our isolates have great similarity with all Turkish and European sequences. |
| Anahtar Kelimeler |
| complete genome sequencing | COVID-19 | phylogenetic analysis | SARS-CoV-2 | SNP analysis |
BM Sürdürülebilir Kalkınma Amaçları
| Atıf Sayıları | |
| WoS | 3 |